(Sorry if you got this twice - my first email didn't see to go through...) Hi Young-Jin, phenix.model_vs_data: - computes the R-factors using all data available, - extracts the R-factors from PDB file header (if available), - extracts resolution limits as well as sigma cutoffs from PDB file header (if available) and re-computes the R-factors using these cutoffs. This is why you get three sets of Rwork/Rfree. Obviously, they may be different. Please let me know if it's still not clear. Pavel. On 5/13/10 10:37 AM, Young-Jin Cho wrote:
Dear Phenix users, This might be trivial questions though... 1. When you did phenix.model_vs_data, I see the discrepancy between R/Rfree. 'After applying resolution and sigma cutoffs' seems more accurate one though, could someone explain why it has such-even small though- discrepancy?
2. Also, when you do phenix.polygon, I used to seeing many branches from old version. With my current version(phenix-1.6.1-343), I normally see only 5 branches. Is there any reasons for that?
Thanks in advance as always.
Young-Jin _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb