Hi,

I'm getting the following error when running phenix.find_peaks_holes

peak=   -3.937 closest distance to pdb=" CB  ASPCB 228 " =    2.259
peak=   -3.521 closest distance to pdb=" O   PROCB 229 " =    2.275
peak=   -4.264 closest distance to pdb=" CD1 LEUCB 231 " =    4.718
peak=   -3.384 closest distance to pdb=" CD1 LEUCB 231 " =    5.050

Traceback (most recent call last):
  File "/opt/X-tal_suite/phenix-dev-2733/build/../modules/cctbx_project/mmtbx/command_line/find_peaks_holes.py", line 550, in <module>

SUMMARY OF MAP PEAKS:
  mFo-DFc >  3:  10775
  mFo-DFc >  6:    847
  mFo-DFc >  9:     42
  mFo-DFc max:   13.04
  mFo-DFc < -3:   6148
  mFo-DFc < -6:    525
  mFo-DFc < -9:     49
  mFo-DFc min:  -10.40

    run(sys.argv[1:])
  File "/opt/X-tal_suite/phenix-dev-2733/build/../modules/cctbx_project/mmtbx/command_line/find_peaks_holes.py", line 511, in run
    result.save_pdb_file(file_name="%s.pdb" % prefix, log=out)
  File "/opt/X-tal_suite/phenix-dev-2733/build/../modules/cctbx_project/mmtbx/command_line/find_peaks_holes.py", line 173, in save_pdb_file
    rg = create_atom(xyz, peak, k)
  File "/opt/X-tal_suite/phenix-dev-2733/build/../modules/cctbx_project/mmtbx/command_line/find_peaks_holes.py", line 159, in create_atom
    rg = iotbx.pdb.hierarchy.residue_group(resseq=str(serial))
ValueError: string is too long for target variable (maximum length is 4 characters, 5 given).

Is it referring to the 5 characters used for the residue name? If so, how do I correct for this? This is a PDB of a virus (60 subunits). Thanks.

Best wishes,
Reza