Now the important question

How can I modify the mask so it doesn't enter pockets within my model? Add HOH with occupancy set to zero and ignore_zero_occupancy_atoms=False?

Or is running polder maps more effective?

Thanks again

Ben

Sent from my Android

-------- Original message --------

From: Pavel Afonine <pafonine@lbl.gov>

Date: 2018-03-09 10:50 AM (GMT-06:00)

To: "Flath, Ben" <bef206@mail.usask.ca>, phenixbb@phenix-online.org

Subject: Re: [phenixbb] View Solvent Mask

Hi Ben,

I was watching the YouTube tutorial on Polder Maps and noticed that the bulk solvent mask was visualized in coot. How can I visualize my bulk solvent mask?

phenix.mask model.pdb

will calculate the mask.

Pavel