Re: [phenixbb] Incorrect secondary structure assignment in a .pdb

On 28/06/18 17:23, Maciej Jagielnicki wrote:

I used a combination of phenix real space refine and Coot to build a model into a cryoEM density map. I used an existing .pdb file as a starting point for my building. During the build, some helical elements became strands and vice versa (it was very clear to my eyes). Unfortunately, neither Phenix nor Coot would automatically update the header information for secondary structure elements

FYI, Coot indeed won't update the header information for secondary structure elements automatically. However you can use Coot to update or generate it add_header_secondary_structure_info(imol) Regards, Paul.