Hi Frank, there would have been some errors during the installation in this case. Can you send me the output when you type ./install ...? Cheers, Paul On Nov 1, 2007, at 10:11 AM, Frank von Delft wrote:
Hi, I just installed the latest phenix version (long overdue), and it burps with the following when I try to run the GUI. Looks like an absolute path was left lying around, no?
Cheers phx
---------------------------------------------------- Running the PHENIX GUI with
/usr/local/phenix/1.3b/phenix-1.3b/build/intel-linux-2.4/base/bin/ python
PHENIX distribution located in /usr/local/phenix/1.3b/phenix-1.3b/phenix
Shell variable SSH_PATH not set
Variable PYMOL_PATH set to /usr/local/phenix/1.3b/ phenix-1.3b/pymol
Shell variable RSH_PATH not set
(python:31886): Pango-WARNING **: No builtin or dynamically loaded modules were found. Pango will not work correctly. This probably means there was an error in the creation of:
'/net/ribbon/scratch1/phenix/phenix-1.3b/build/intel-linux-2.4/base/ etc/pango/pango.modules' You should create this file by running pango-querymodules.
(python:31886): Pango-WARNING **: pango_shape called with bad font, expect ugly output
(python:31886): Pango-WARNING **: pango_font_get_glyph_extents called with null font argument, expect ugly output
(python:31886): Pango-WARNING **: pango_font_get_metrics called with null font argument, expect ugly output
(python:31886): Pango-WARNING **: _pango_cairo_font_install called with bad font, expect ugly output
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-- Paul Adams Deputy Division Director, Physical Biosciences Division, Lawrence Berkeley Lab Adjunct Professor, Department of Bioengineering, U.C. Berkeley Vice President for Technology, the Joint BioEnergy Institute Head, Berkeley Center for Structural Biology Building 64, Room 248 Tel: 510-486-4225, Fax: 510-486-5909 http://cci.lbl.gov/paul Lawrence Berkeley Laboratory 1 Cyclotron Road BLDG 64R0121 Berkeley, CA 94720, USA. --