Hi Ahmad,

Is this validation for cryo-EM structures or from X-ray/neutron structures? With cryo-EM maps there is some additional tracking of shifts and that could be a cause of the problem. Is it possible to send us your input files (off-list) so that we can investigate? 

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909


On Wed, Jul 17, 2019 at 10:46 AM Ahmad Khalifa <underoath006@gmail.com> wrote:
Hello,

After the update, when I open coot from validation with Phenix integration, and navigate to different atoms, clashes, etc, I get moved to an empty space outside of my map and model. 

What's going wrong here?

Regards. 
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