On Thu, Jun 20, 2013 at 8:12 AM, Ulrich Baumann
I tried to limit the resolution by either --diff_limit 4 or --high_resolution 4.0. This does not work - probably is not supposed to work in this way?
Yes, you've stumbled upon a weird feature of our command line argument processing: generally most programs (including the GUI) use a very flexible syntax we call "PHIL" (Python Hierarchial Interface Language), which would be this: high_resolution=4.0 without the leading dashes. In some of the newer programs, including most anything I've written, boolean parameters can be expressed one of two ways: write_maps=True --write_maps but that only applies to booleans. Any other value needs the "=" symbol and no dashes. Unfortunately since we can't even get everyone to agree to use the PHIL syntax there is still some inconsistency in how the different programs in Phenix accept input. -Nat