Re: [phenixbb] Phenix installation

Hi Sam, Great! Can you provide the full log during installation? Also, in the installer directory after running the installer, there will be a "base_tmp" directory that has 2 log files. Can you post or send me the log output? I'd like to pinpoint which script is looking specifically for /usr/bin/python. I also want to make sure that the installer works regardless of the Python version used to run the installation script. Hi Murpholino, We are in the process of migrating Phenix to Python 3, but we want to make sure everything works the same before making Python 3 installers available to everyone. We have migrated CCTBX to work in Python 3 and we are running continuous integration with Python 3.6, 3.7, and 3.8 on Azure Pipelines on all platforms. Here's some example output from Azure Pipelines for some upcoming changes ( https://dev.azure.com/cctbx/cctbx_project/_build/results?buildId=4561&view=results). We'll be using the same approach to testing Phenix to ensure consistency while we make the changes for Python 3 compatibility. Thanks for your patience! -- Billy K. Poon Research Scientist, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory 1 Cyclotron Road, M/S 33R0345 Berkeley, CA 94720 Tel: (510) 486-5709 Fax: (510) 486-5909 Web: https://phenix-online.org On Wed, May 6, 2020 at 2:23 AM Sam Tang wrote:

Hi

Many thanks! I've got Phenix installed after switching back to python2.

Brs

Sam

On Wed, 6 May 2020 at 01:03, Murpholino Peligro wrote:

...

Hi Sam. Fedora is dropping support for the *old* python (i.e. python2). https://fedoraproject.org/wiki/Changes/RetirePython2 You have to install python2 in your fedora `sudo dnf install python27` will do the trick. I have successfully installed Phenix in F32. I wonder when Phenix is going to move to python 3? I know is not an easy task.

El mar., 5 de may. de 2020 a la(s) 08:06, Sam Tang ([email protected]) escribió:

...

Hi

I am installing Phenix on a Fedora 30 station. It complains line 15: /usr/bin/python: No such file or directory. I have checked that there is python3.7.3 pre-loaded. So did I miss anything obvious...?

Brs

Sam _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]