Re: [phenixbb] same origin

Tom, Thanks a lot ________________________________ From: Tom Terwilliger To: PHENIX user mailing list Sent: Wed, November 24, 2010 3:14:06 PM Subject: Re: [phenixbb] same origin Hi Ram, You can use phenix.get_cc_mtz_pdb map_coeffs1.mtz model_2.pdb which will create offset.pdb which is a copy of model_2.pdb, adjusted for the origin of map_coeffs_1.mtz, and therefore superimposing on model_1.pdb with space-group symmetry plus allowed origin shifts. This will not change the hand, however. I hope that does what you need! -Tom T On Nov 24, 2010, at 1:53 PM, r n wrote: <--static--liam_fetch_lb.gif>

Hi all

I wanted to compare the two models from two data set. I want the MR replacement in same origin to compare their them with respect to the map and model.

I tried reforigin in ccp4 , it gave me some error , that I am not aware or not clear.

I did tried overlay the two model and rfree is going up. Most likely different hands, so Is there any way to compare the two model and data and modify them in Phenix either reindex or shift the model origin to same in all cases.

Thought phenix.xmanip could help, not seen any option to do it command line or in the GUI.

I did tried def file, but phenix.xmanip params.def , it complains me that unknown file or keyword?

any help will be appreciated.

Thanks ram

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Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545 Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss