Hi Billy,
CentOS 6 installer is giving me the same error. I've got the CLI version running, which is what I prefer. Nonetheless I'd like to get the GUI working as well.
Best wishes,
Reza
Reza Khayat, PhD
Assistant Professor
City College of New York
Department of Chemistry
New York, NY 10031
________________________________
From: Billy Poon
Sent: Wednesday, November 23, 2016 10:40 AM
To: Reza Khayat
Cc: [email protected]
Subject: Re: [phenixbb] Crashing Phenix
Hi Reza,
For Debian/Ubuntu, please try the CentOS 6 installer. That is more compatible with more recent linux distributions.
--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org
On Tue, Nov 22, 2016 at 6:07 PM, Reza Khayat mailto:[email protected]> wrote:
Debian 8 (jessie)
Reza Khayat, PhD
Assistant Professor
City College of New York
Department of Chemistry
New York, NY 10031
________________________________
From: Billy Poon mailto:[email protected]>
Sent: Tuesday, November 22, 2016 6:04 PM
To: Reza Khayat
Cc: [email protected]mailto:[email protected]
Subject: Re: [phenixbb] Crashing Phenix
Hi Reza,
What is the linux distribution and version that you are using?
--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709tel:%28510%29%20486-5709
Fax: (510) 486-5909tel:%28510%29%20486-5909
Web: https://phenix-online.org
On Tue, Nov 22, 2016 at 5:22 PM, Reza Khayat mailto:[email protected]> wrote:
Hi,
Typing locale generates:
LANG=en_US.UTF-8
...
LC_ALL=
Running
sudo locale-gen "en_US.UTF-8"
does not change anything
modifying /etc/environment to include
LC_ALL=en_US.UTF-8
LANG=en_US.UTF-8
Then Running locale indicates that LC_ALL=en_US.UTF-8. However, the problem persists.
Reza
Reza Khayat, PhD
Assistant Professor
City College of New York
Department of Chemistry
New York, NY 10031
________________________________
From: Billy Poon mailto:[email protected]>
Sent: Tuesday, November 22, 2016 4:57 PM
To: Reza Khayat
Cc: [email protected]mailto:[email protected]
Subject: Re: [phenixbb] Crashing Phenix
Hi Reza,
Do you have the LANG or LC_ALL environment variables set? If you have LANG can you try setting LC_ALL to the same value? Also, make sure that there is a "UTF-8" somewhere. So for English (U.S.), LC_ALL should be set to en_US.UTF-8.
--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709tel:%28510%29%20486-5709
Fax: (510) 486-5909tel:%28510%29%20486-5909
Web: https://phenix-online.org
On Tue, Nov 22, 2016 at 3:38 PM, Reza Khayat mailto:[email protected]> wrote:
Hi,
I recently installed phenix-1.11.1-2575 (CentOS 5 flavor) and am getting the following crashes when trying to launch the GUI.
15:31:23: Cannot set locale to language "English".
15:31:23: locale 'en_GB' cannot be set.
phenix-1.10.1-2155 (on the same system) also gives me a locale 'en_GB' error but the GUI launches and I can run programs.
Any suggestions on how to fix this problem? Thanks.
Best wishes,
Reza
Reza Khayat, PhD
Assistant Professor
City College of New York
Department of Chemistry
New York, NY 10031
________________________________
From: [email protected]mailto:[email protected] mailto:[email protected]> on behalf of Pavel Afonine mailto:[email protected]>
Sent: Wednesday, August 3, 2016 7:39 AM
To: [email protected]mailto:[email protected]
Subject: Re: [phenixbb] Realspace refinement
Hi Reza,
yes, it does.
Pavel
On 8/1/16 04:16, Reza Khayat wrote:
Hi,
Does realspace refinement consider temperature factors during refinement? Thanks.
Best wishes,
Reza
Reza Khayat, PhD
Assistant Professor
Department of Chemistry
City College of New York
85 Saint Nicholas Terrace, CDI 2.318
New York, NY 10031
http://www.khayatlab.org/
212-650-6070tel:212-650-6070
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