Phenix developers,

When I run a refinement, it appears that the CRYST card is not being written as expected by programs like pymol and coot.  I’ll start with a file that has C 1 2 1 and phenix.refine will write out C2 .  If I attempt to view symmetry related molecule within coot or pymol, these programs complain that there is no symmetry op.  If  “fix” the spacegroup in the CRYST line, pymol and coot are happy and generate the related molecules.

Best,

Nino