Hello List,
I would like to perform phenix.rosetta_refine on a structure. I
understand that to use this program, I need to set up phenix and rosetta
installations separated from those used in MR_Rosetta. I installed the
most recent phenix and rosetta and followed the online documents, but
when I tried to run "rosetta.build_phenix_interface", the program failed
immediately with the following error messages:
False
scons: Reading SConscript files ...
Running versioning script ... fatal: Not a git repository (or any of the
parent directories): .git
Done. (0.0 seconds)
Could not find platform independent libraries <prefix>
Could not find platform dependent libraries
Consider setting $PYTHONHOME to <prefix>[:]
ImportError: No module named site
CalledProcessError: Command '['./update_options.sh']' returned non-zero
exit status 1:
File "/usr/local/rosetta-refine/rosetta/main/source/SConstruct", line
172:
main()
File "/usr/local/rosetta-refine/rosetta/main/source/SConstruct", line
163:
SConscript("SConscript", "build")
File
"/usr/local/rosetta-refine/rosetta/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py",
line 614:
return method(*args, **kw)
File
"/usr/local/rosetta-refine/rosetta/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py",
line 551:
return _SConscript(self.fs, *files, **subst_kw)
File
"/usr/local/rosetta-refine/rosetta/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py",
line 260:
exec _file_ in call_stack[-1].globals
File "/usr/local/rosetta-refine/rosetta/main/source/SConscript", line 28:
subprocess.check_call(["./update_options.sh"])
File
"/usr/local/rosetta-refine/phenix-dev-2328/base/lib/python2.7/subprocess.py",
line 540:
raise CalledProcessError(retcode, cmd)
These messages are not very informative and I don't know what to do next.
Any help will be greatly appreciated.
Yonglin Hu
