Hi Ulrich, phenix.refine refines only against Fs. We don't have intensity based refinement targets in phenix.refine. If your input file has Is, it will convert them automatically into Fs (to make sure that it actually did it, please look for corresponding message lines in log-file). Pavel. Ulrich Baumann wrote:
Dear Phenix,
I came across the following: my .mtz reflection file contains columns IMEAN SIGIMEAN F SIGF. phenix.refine picks the IMEAN SIGIMEAN columns (column types are properly assigned, by the way) -- does it per default refine against intensities, e.g. like SHELX? This would probably mean that we better should feed reflection files before TRUNCATE or similar programs, right?
Thank you very much,
Ulrich
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