On Nov 1, 2016 3:07 PM, <rdo20@cam.ac.uk> wrote:

Have you tried one of the recent nightly builds or the centos5 version?

 

Rob

 

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--
Robert Oeffner, Ph.D.
Research Associate, The Read Group
Department of Haematology,
Cambridge Institute for Medical Research
University of Cambridge
Cambridge Biomedical Campus
Wellcome Trust/MRC Building
Hills Road
Cambridge CB2 0XY

www.cimr.cam.ac.uk/investigators/read/index.html
tel: +44(0)1223 763234
mobile: +44(0)7712 887162

 

From: abhisek Mondal
Sent: 01 November 2016 07:39
To: phenixbb@phenix-online.org
Subject: [phenixbb] phenix fails to configure on fedora 20

 

Hi,

I'm using Fedora 20 on a 4 core laptop. When I tried to install phenix it gave following error.

 

Same version installed fine in my workstation but keep failing here.

 

Please help me out here.

Thanks.

 

 

[root@viralhost phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6]# ./install 

 

    ==========================================================================

                          Phenix Installation

 

                          version: 1.10.1-2155

                     machine type: intel-linux-2.6

                       OS version: 3.19.8-100.fc20.i686

                      destination: /usr/local/phenix-1.10.1-2155

                  # of processors: 4

    =========================================================================

    

Configuring Phenix components...

Traceback (most recent call last):

  File "./bin/install.py", line 262, in <module>

    installer(sys.argv[1:]).install()

  File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 185, in install

    self.install_from_binary()

  File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 295, in install_from_binary

    self.reconfigure(log=log)

  File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 460, in reconfigure

    call(args=args, log=log, verbose=self.options.verbose)

  File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/installer_utils.py", line 81, in call

    raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc))

RuntimeError: Call to '/usr/local/phenix-1.10.1-2155/base/bin/python /usr/local/phenix-1.10.1-2155/modules/cctbx_project/libtbx/configure.py --current_working_directory /usr/local/phenix-1.10.1-2155/build --command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit' failed with exit code 126

 

--

Abhisek Mondal

Research Fellow

Structural Biology and Bioinformatics Division

CSIR-Indian Institute of Chemical Biology

Kolkata 700032

INDIA