On Wed, May 11, 2011 at 1:11 PM, Daniel PANNE
I get the following error only in 1.7.1-743 but not in 1.7_650. ******************************************************************************* ERROR: Unused parameter definitions: refinement.main.compute_optimal_errors (file "P1_refine_rigid.eff", line 257) refinement.pdb_interpretation.peptide_link.use_finite_differences (file "P1_refine_rigid.eff", line 514) refinement.secondary_structure.h_bond_restraints.substitute_n_for_h (file "P1_refine_rigid.eff", line 977) ... *******************************************************************************
Sorry: Unused parameter definitions: Please check the input file(s) for spelling errors and obsolete parameter definitions. To disable this error message, add --unused_ok to the command line arguments.
Sorry, most of these were my changes - I wanted to make the parameters for configuring hydrogen bonding energy functions more general and not specific to secondary structure (it will allow us more flexibility in the future). Like Pavel says, this tends to happen with new versions, and it's easy to avoid, but the program stops because we want to make sure users are aware of the changes. FYI, if you've modified the secondary structure restraint parameters, many of them moved to refinement.hydrogen_bonding. -Nat