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Hi Engin, try: phenix.pdbtools model_stat=true model.pdb If this doesn't do what you want then please let me know. Pavel On 5/1/13 12:15 PM, Engin Özkan wrote:
Hi everybody,
I want to create a comprehensive, human-readable log file by running validation using molprobity tools within phenix command-line. I do not have structure factors/maps. Apparently, the GUI runs validation through phenix.model_vs_data (according to the .eff file), but in command-line, I cannot get phenix.model_vs_data to run without an mtz/hkl. I guess I could provide it a fake data file, and then set the comprehensive flag to "True"? BTW, the log file produced by the GUI is not comprehensive at all.
I could not find a related mmtbx or cctbx function either. Another mentioned tool, phenix.validate, does not even exist in my installation (dev 1361).
Thanks, Engin