I use same data set for refinement, so Rfree is also marked for same reflection. The only difference is that I chose “Data labels” from Phenix IMEAN or I(+) I(-).

What I meant is that the IMEAN set is not the same as I(+),I(-) at least because the number of reflections in IMEAN is not the same as in I(+),I(-).

By the way, I use version 1.8.2 for refinement. Newer versions gives higher R/Rfree.

Should be the other way around...

Pavel