Can you send the file to me off-list? I'll have a closer look once I have the file. Pavel On 3/11/19 16:10, yong zhou wrote:
Hi,
Recently I deposited a structure to PDB. However, I was told there is a large difference between reported (77.89%) and calculated (88.36%) values for data completeness.
In order to confirm the information, I used the command phenix.reflection_statistics and the result is as following.
Resolution range: 31.6787 1.91132
Completeness in resolution range: 0.783333
Completeness with d_max=infinity: 0.783193
Anomalous completeness in resolution range: 0.599544
Bijvoet pairs: 15786
Lone Bijvoet mates: 9291
Mean anomalous difference: 0.0671
Space group of the intensities: P 2 2 2
Space group of the metric:P m m m
Tolerance used in the determination of the
lattice symmetry: 3 degrees
Possible twin laws: None
Completeness of 4-8-(GlcNAc)5/output4-8.sca:I(+),SIGI(+),I(-),SIGI(-):
unused:- 31.6830 [0/9] 0.000
bin1: 31.6830 -1.9113 [28083/29673] 0.946
unused:1.9113 -[0/0]
There are two completeness values 0.783 and 0.946.
So which is the correct one?
Look forward to the reply.
Yong Zhou
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