Hi Christian,
Oh I'm sorry about the "killed".  That means your computer ran out of memory running combine_focused_maps.  It is possible that you might be able to run it if you first box your maps closer around your models, so that the maps are smaller.
All the best,
Tom T

On Thu, Dec 12, 2024 at 1:59 PM Christian Steinmetzger <christian.steinmetzger@imbim.uu.se> wrote:
This has been a very insightful discussion!

The nightly build suggested by Tom takes in my maps, model and restraints without giving any error. It is then sitting "Refining model 1 with rigid_body refinement" for a while before the terminal shows "Killed".

For the moment I will look into some alternatives for creating composite maps, e.g. in ChimeraX.

Christian
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Thomas C Terwilliger
Laboratory Fellow, Los Alamos National Laboratory
Senior Scientist, New Mexico Consortium
100 Entrada Dr, Los Alamos, NM 87544
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