Dear all,

Sorry, I made a mistake in the former email.

I used the   "real space refinement"to refine my protein-ligand complex. The cif file got from  "real space refinement"  was put into "Prepare model for PDB depositon" and then I used "Get PDB validation report" to see the validation report.

It's a pity I got the following error message from "Get PDB validation report": The PDB server reports a failure with you data. Please check that your input files following the CIF specifications.

However, if I use the cif file from phenix.refine with the same procedure, I got the validation reports normally.

Does anyone has similar problem?

I am using Phenix 1.20.1-4487.

Thanks a lot for the help.

Best

Liu