Hi Raj, Try this command: phenix.autobuild data=data.mtz model=coords.pdb composite_omit_type=simple_omit Coords.pdb should correspond to the best model you have so far. Mike [email protected] wrote:
Hi, I have a loop that was improperly built when I ran autobuild. the density according to the Fobs-Fcalc maps is not that great.
Someone told me that autobuild can use omit maps to build / rebuild the loops so you dont have to do it by hand.
Looking at the manual, I found the command, but am a little confused.
The model used is the entire model correct? the target.pdb is the chain or region that was not correctly built. For iterative building...how many cycles should I go for?
phenix.autobuild data=w1.sca model=coords.pdb omit_box_pdb=target.pdb \ composite_omit_type=iterative_build_omit
thanks Raj
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