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Thank you so much, Adding the altloc identifier appears to fix the problem That seems to fix the problem. Best, -Jerome On Jun 1, 2012, at 5:09 AM, Pavel Afonine wrote:
Jerome,
you may also want to check the ligand's cif file to make sure the library geometry is what you actually expect.
Pavel
On 5/31/12 11:55 AM, Jerome Nwachukwu wrote:
Hi: I have a 2.2Å structure containing a ligand in at least 2 alternate conformations. When the structure is refined via XYZ refinement + occupancy using phenix.refine, both ligand conformers are kicked out of the electron density. Is there a way to prevent this? Thank you, -Jerome
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