Hi Joel,

phenix.maps actually supposed to handle multi-model files provided that the occupancies are meaningful (equal to 1/N, where N is the number of models). But honestly I've never tried it with more than a few (5-10) models..

Pavel


On 7/23/13 8:20 AM, Tom Burnley wrote:
Hi Joel,

Short answer is no you need to run the jobs again.  However if they took an age to complete let me know as I have some scripts that can help reconstruct the maps.  Also please could you email me (off list) the input parameter file you used.  You are correct that the map_type=None likely caused the crash but I'd like to check that and make it so it intercepts this issue earlier in the code.

Cheers,

Tom


On 23 July 2013 17:05, Bard, Joel <[email protected]> wrote:

Hi-

 

I ran phenix.ensemble refinement which worked very nicely but crashed during map output.  I think this was my fault for using a parameter file that had map_type = None (I didn’t look and assumed the default was reasonable).  I would like to calculate maps after the fact.  Is there a way to run the map calculation on the output ensemble pdb file and reflection data?  I tried phenix.maps which choked on the huge ensemble.

 

Thanks,

 

Joel