Maybe I&#39;m missing something here, but don&#39;t you just import both cif files (for nucleic acid, and MPD individually) into phenix.refine? Did you try that?<div>Kelly Daughtry<br><div><br></div><div><br clear="all">*******************************************************<br>

Kelly Daughtry, Ph.D.<br>Post-Doctoral Fellow, Raetz Lab<br>Biochemistry Department<br>Duke University<br>Alex H. Sands, Jr. Building<br>303 Research Drive<br>RM 250<br>Durham, NC 27710<br>P: 919-684-5178<br>*******************************************************<br>


<br><br><div class="gmail_quote">On Mon, Mar 5, 2012 at 12:29 PM, Xue-Yuan Pei <span dir="ltr">&lt;<a href="mailto:xyp20@mole.bio.cam.ac.uk">xyp20@mole.bio.cam.ac.uk</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">

Dear All:<br>
I am using phenix-1.7.2 to refine my structure. Now i am facing a problem with .cif file. I could not generate  cif files for a modified nucleic acid and MPD at same time with phenix.elbow or phenix.ready_set. If I use phenix.elbow to generate cif file for modefied nucleic acid only, phenix .refine complains about MPD cif not found, same for MPD. If I combine two cif files together, phenix.refine also complains. Is there better to generate cif file containing both modified nucleic acid and MPD?<br>


Many thanks for your help,<br>
Xue<br>
<br>
<br>
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