Hi Pavel,

I'm having trouble using your tool...Can you unpack

~terwill/fofomap.tgz

and try:

ls

coords.pdb native.mtz native.sca peak.mtz peak.sca

[ttmbpro:transfer/test/testit] terwill% phenix.fobs_minus_fobs_map peak.mtz native.mtz phase_source=coords.pdb

========================== phenix.fobs_minus_fobs_map =========================

Command line arguments: 

['peak.mtz', 'native.mtz', 'phase_source=coords.pdb']

Sorry: No PDB file found.

Also:

 phenix.fobs_minus_fobs_map peak.sca native.sca coords.pdb

========================== phenix.fobs_minus_fobs_map =========================

Command line arguments: 

['peak.sca', 'native.sca', 'coords.pdb']

*** Parameters:

f_obs_1_file_name = None

f_obs_1_label = None

f_obs_2_file_name = None

f_obs_2_label = None

high_resolution = None

low_resolution = None

sigma_cutoff = None

phase_source = None

scattering_table = *xray neutron

Sorry: No reflection data file found.

Thanks!

-Tom T

Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: [email protected]
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB

CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss

On Apr 30, 2009, at 11:39 AM, Pavel Afonine wrote:

fobs_minus_fobs_map

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