Hi Chiara
I have installed coot-1 using homebrew and using /opt/homebrew/Cellar/coot/1.1.20/bin/coot works for me.
Ciao
Roberto
Roberto A Steiner
www.steinerlab.org
https://twitter.com/steiner_lab
[email protected]
Randall Centre for Cell and Molecular Biophysics
Faculty of Life Sciences and Medicine
King's College London
Room 3.10A
New Hunt's House, Guy's Campus
SE1 1UL, London, UK
Phone 0044 20 78488216
Fax 0044 20 78486435
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Dipartimento di Scienze Biomediche
Università degli Studi di Padova
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On 28/01/2026, 13:27, "Rapisarda, Chiara /FR via phenixbb" mailto:[email protected]> wrote:
Hello,
I have a Mac that I upgraded to Tahoe, and now coot 0.9 isn’t working any more.
I would like to link phenix to coot-1. I can do that by adding:
/Applications/ccp4-9/coot_py3/bin/coot
To the coot path in preferences, but after a refinement when I open coot , it is open but it is not connected to the phenix refine job and no PDB nor map is open.
I am aware that I can manually open the map and pdf, I would like to know if coot-1 can be opened in a way that will allow me to navigate the structure using phenix.
When I ask gemini it tells me that I should point it to:
/Applications/ccp4-9/bin/coot-py3
But it doesn’t exist in my ccp4 installation.
Has anyone successfully managed to link coot-1 to phenix using a good bridge?
Any help will be greatly appreciated.
Best,
Chiara
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