Hi Edward,

I had a related question- is it possible to have env. variables evaluated in an eff file?
(Like in cns, {===>} parameter_infile_1="CNS_TOPPAR:protein_rep.param";, CNS_TOPPAR is env var)

I'm afraid no.

If not, do command line parameters override what is in the eff file? Like:

Yes, whatever is in command-line arguments overrides values in .eff file.

I think simple bash/tsch script would be the easiest way to solve the original Andrew's problem.

Best regards,

Oleg Sobolev.

On 11/29/2016 05:21 PM, Andrew Morin wrote:

Hello,

I am trying to find a convenient way to generate maps using phenix.mtz2map at increasingly greater values of d_min.

For example:

I have a .mtz file of a structure solved at 2.4A. I run phenix.mtz2map with d_min=none and obtain a map using all of the resolution data. I would like to also create 10 more maps with d_min = 3.4, 4.4, 5.4, 6.4,...12.4A.
An mtz of 1.7A would increment at 2.7, 3.7...11.7A, etc.

Might anyone know of a handy way to automate this over a large number of mtz files?

ALTERNATIVELY - I am performing a phenix.cut_out_density step prior to this. So if it might be easier to automate a incrementing high resolution cutoff in phenix.cut_out_density, that would also work.

Thanks for your help.

-Andrew

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