Re: [phenixbb] generate_cif_for_NT_MPD

Yes, I did try to import both cif files (for nucleic acid and MPD individually) into phenix.refine, but with no luck. any suggestion? Regards, Xue On Mon, 5 Mar 2012, Kelly Daughtry wrote:

Maybe I'm missing something here, but don't you just import both cif files (for nucleic acid, and MPD individually) into phenix.refine? Did you try that?Kelly Daughtry

******************************************************* Kelly Daughtry, Ph.D. Post-Doctoral Fellow, Raetz Lab Biochemistry Department Duke University Alex H. Sands, Jr. Building 303 Research Drive RM 250 Durham, NC 27710 P: 919-684-5178 *******************************************************

On Mon, Mar 5, 2012 at 12:29 PM, Xue-Yuan Pei wrote: Dear All: I am using phenix-1.7.2 to refine my structure. Now i am facing a problem with .cif file. I could not generate  cif files for a modified nucleic acid and MPD at same time with phenix.elbow or phenix.ready_set. If I use phenix.elbow to generate cif file for modefied nucleic acid only, phenix .refine complains about MPD cif not found, same for MPD. If I combine two cif files together, phenix.refine also complains. Is there better to generate cif file containing both modified nucleic acid and MPD? Many thanks for your help, Xue

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