Hi Sam,

where did you find "The "cut- off sigma(F)" value is 0.12" ?

If you send me the .log file created by phenix.refine I might be able to explain what you see.

Pavel.

On 7/8/10 6:32 AM, Sam Stampfer wrote:

Hi,

I'm in the process of depositing coordinates for a few structures and I noticed that the "number of unique reflections (observed)" is different in the "refinement statistics section" (108812) (read automatically from the phenix-refined pdb file) versus the "reflections" section (118749). The "cut- off sigma(F)" value is 0.12 (read automatically from the phenix-refined file). What criteria does phenix use to reject these ~10,000 reflections?

Thanks!

-Sam
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