On Sat, Aug 23, 2014 at 11:54 AM, Andreas Förster <docandreas@gmail.com> wrote:

I encounter the following error when running phenix.table_one from the command line (RHEL 6.3 64-bit, phenix-dev-1769):

andreas@csbstereo in blah: phenix.table_one
Traceback (most recent call last):
File "/csb/soft/Linux64/share/phenix-dev-1769/build/intel-linux-2.6-x86_64/../../phenix/phenix/command_line/table_one.py", line 6, in <module>
phenix.automation.table_one.run(sys.argv[1:], auto_extract_labels=True,
AttributeError: 'module' object has no attribute 'run'

Aunt Google insists that this is "a circular import issue".

What do the developers say?

"Oops"

I rewrote the program a few months ago to be an extension of MolProbity, but I forgot to remove the old launcher. It'll be fixed in the next build. You can patch your installation by doing this:

cd /csb/soft/Linux64/share/phenix-dev-1769/

rm -rf phenix/phenix/command_line/table_one.py

cd build/intel-linux-2.6-x86_64

libtbx.refresh

-Nat