Sorry, can you try running that command again, but in the 

/usr/local/phenix-dev-2666/build

directory? The command needs to run in the same directory specified by the --current_working_directory flag.

--

Billy K. Poon

Research Scientist, Molecular Biophysics and Integrated Bioimaging

Lawrence Berkeley National Laboratory

1 Cyclotron Road, M/S 33R0345

Berkeley, CA 94720

Tel: (510) 486-5709

Fax: (510) 486-5909

Web: https://phenix-online.org

On Mon, Feb 6, 2017 at 4:04 PM, Murpholino Peligro <murpholinox@gmail.com> wrote:

[eva03 phenix-installer-dev-2666-intel-linux-2.6-x86_64-centos5]# /usr/local/phenix-dev-2666/base/bin/python /usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py --current_working_directory /usr/local/phenix-dev-2666/build --command_version_suffix dev-2666 phenix phaser solve_resolve labelit dials xia2 iota prime
Traceback (most recent call last):
  File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py", line 22, in <module>
    if not run():
  File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py", line 17, in run
    libtbx.env_config.cold_start(sys.argv)
  File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/env_config.py", line 2294, in cold_start
    " --current_working_directory %s" % show_string(build_path))
RuntimeError: Not equivalent to the current working directory: --current_working_directory "/usr/local/phenix-dev-2666/build"

I am trying the centos5 version. I'll try the centos6 ...

2017-02-03 15:39 GMT-06:00 Billy Poon <bkpoon@lbl.gov>:

Hi,

Can you provide the output for

'/usr/local/phenix-dev-2666/base/bin/python /usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py --current_working_directory /usr/local/phenix-dev-2666/build --command_version_suffix dev-2666 phenix phaser solve_resolve labelit dials xia2 iota prime'

That is the command that is failing.

Also, which installer are you using? The CentOS 6 installer is generally more compatible with more recent versions.

--

Billy K. Poon

Research Scientist, Molecular Biophysics and Integrated Bioimaging

Lawrence Berkeley National Laboratory

1 Cyclotron Road, M/S 33R0345

Berkeley, CA 94720

Tel: (510) 486-5709

Fax: (510) 486-5909

Web: https://phenix-online.org

On Thu, Feb 2, 2017 at 2:02 PM, Murpholino Peligro <murpholinox@gmail.com> wrote:

Dear all.

has anyone been lucky with the installation of phenix in manjaro or any other archlinux-based distribution?

Thanks

Ps. Error looks like http://pastebin.com/WzwrbK8W

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