Hi John, you should probably download the latest prerelease of PHENIX (d7), from the web page. This contains a version of phenix.refine from early July. Cheers, Pau' On Jul 30, 2007, at 10:05 AM, john kryst wrote:
Hi all !!!
Thanks a lot to all of you for your suggestions... As many of you have guessed it is a problem of Bulk solvent correction. When i generated the pdb file using 0 cycles, the values are very much comparable with phenix.refine. Interestingly CNS-1.2 xtal_pdbsubmission gave the same result as phenix.refine. which once again confirms that its a bulk solvent correction problem.
As Huanwang suggested, pdb_extract could generate submission ready cif file.
Once again thanks to all of you... But still i have problem with rmsd_bonds. I am using phenix.refine version 2007_05_29_2026 . Refmac gave rmsd_bonds 0.009 and rmsd_angles1.211 but phenix gave rmsd_bonds 0.006 & rmsd_angles 0.793.
regards John _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
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