Re: [phenixbb] Coot does not start up with OS 10.11 El Capitan

Dear All, I re-installed Quartz as suggested. Then I have more verbose messages upon launching coot from the shell (See below). I don’t know if it is a general problem or a problem related to the configuration of my machine. Thanks. Benoit mmdcd-img2:bin B.Masquida$ ./coot INFO:: Reading coordinate file: /Library/Coot/share/coot/standard-residues.pdb PDB file /Library/Coot/share/coot/standard-residues.pdb has been read. Spacegroup: P 1 initalize graphics molecules...done. filter_fileselection_filenames_state () get_active_map_drag_flag () use_graphics_interface_state () INFO:: coot.py imported INFO:: coot_python initialized Running python script /Library/Coot/lib/python2.7/site-packages/coot/coot_load_modules.py Good Morning B.masquida, Welcome to Coot. 0.8.3-pre set_display_intro_string ("Good Morning B.masquida, Welcome to Coot. 0.8.3-pre") Coot Python Scripting GUI code found and loaded. Coot Python Scripting GUI code found and loaded. use_graphics_interface_state () filter_fileselection_filenames_state () get_active_map_drag_flag () coot-bin: Fatal IO error 35 (Resource temporarily unavailable) on X server /private/tmp/com.apple.launchd.cTrzTueRvK/org.macosforge.xquartz:0. coot-bin: Fatal IO error 35 (Resource temporarily unavailable) on X server /private/tmp/com.apple.launchd.cTrzTueRvK/org.macosforge.xquartz:0. mmdcd-img2:bin B.Masquida$ Benoît Masquida [email protected] UMR 7156 GMGM tel: +33 3 68 85 14 81 fax: +33 3 68 85 13 65 IPCB - Plateforme de Biologie 4 Allée Konrad Roentgen 67081 STRASBOURG Cedex

Le 21 avr. 2016 à 17:10, Xiao Lei a écrit :

Hi BM,

If it happens after you upgrade the system, you may try re-install the Xquartz.

On Apr 21, 2016 6:48 AM, "Benoît Masquida" mailto:[email protected]> wrote: Dear Phenix,

The graphic window of coot does not open either launch from the shell or from Phenix GUI. Has anyone experienced (and solved) this problem on El Capitan (from Apple)?

Thanks for your help.

BM

-- Benoît Masquida [email protected] mailto:[email protected] UMR 7156 GMGM tel: +33 3 68 85 14 81 tel:%2B33%203%2068%2085%2014%2081 fax: +33 3 68 85 13 65 tel:%2B33%203%2068%2085%2013%2065 IPCB - Plateforme de Biologie 4 Allée Konrad Roentgen 67081 STRASBOURG Cedex

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