Dear Phenix/Rosetta Developers, we get following error message when
running rosetta.refine on ubuntu 14.04 and on scientic linux 6.0.



untimeError : Aborted due to error in job 1.
Traceback:
  File
"/home/xsoft/phenix-dev-2247/modules/cctbx_project/libtbx/runtime_utils.py",
line 179, in run
    return_value = self.target()

  File
"/home/xsoft/phenix-dev-2247/modules/cctbx_project/libtbx/runtime_utils.py",
line 74, in __call__
    result = self.run()

  File
"/home/xsoft/phenix-dev-2247/modules/phenix/phenix/command_line/rosetta_refine.py",
line 300, in run
    return run(args=list(self.args))

  File
"/home/xsoft/phenix-dev-2247/modules/phenix/phenix/command_line/rosetta_refine.py",
line 189, in run
    debug=params.output.debug)

  File
"/home/xsoft/phenix-dev-2247/modules/phenix/phenix/rosetta/refine.py",
line 313, in __init__
    self.run_jobs()

  File
"/home/xsoft/phenix-dev-2247/modules/phenix/phenix/rosetta/refine.py",
line 397, in run_jobs
    check_result(result)

  File
"/home/xsoft/phenix-dev-2247/modules/phenix/phenix/rosetta/refine.py",
line 379, in check_result
    raise RuntimeError("Aborted due to error in job %d." % result.job_id)



Platform info:
__FILE__ =
/home/builder/slave/phenix-nightly-intel-linux-2_6-x86_64-centos6/modules/cctbx_project/boost_adaptbx/meta_ext.cpp
__DATE__ = Dec  3 2015
__TIME__ = 23:02:36
__TIMESTAMP__ = Tue Sep  1 10:03:35 2015
__x86_64__
__linux
__GNUC__ = 4
__GNUC_MINOR__ = 4
__GNUC_PATCHLEVEL__ = 7
boost::python::cxxabi_cxa_demangle_is_broken(): false
__GXX_WEAK__ = 1
__LP64__ = 1
__VERSION__ = 4.4.7 20120313 (Red Hat 4.4.7-4)
FE_INEXACT = 32
FE_DIVBYZERO = 4
FE_UNDERFLOW = 16
FE_OVERFLOW = 8
FE_INVALID = 1
FE_ALL_EXCEPT = 61
__SSE2__ = 1
BOOST_LIB_VERSION = 1_55
PY_VERSION = 2.7.8
PYTHON_API_VERSION = 1013
sizeof(bool) = 1
sizeof(short) = 2
sizeof(int) = 4
sizeof(long) = 8
sizeof(std::size_t) = 8
sizeof(void*) = 8
sizeof(long long) = 8
sizeof(float) = 4
sizeof(double) = 8
sizeof(long double) = 16
sizeof(boost::int32_t) = 4
sizeof(boost::uint32_t) = 4
sizeof(wchar_t) = 4
__PTRDIFF_TYPE__
Py_USING_UNICODE
sizeof(PY_UNICODE_TYPE) = 2
gnu libc version: 2.12
BOOST_ADAPTBX_TYPE_ID_SIZE_T_EQ_UNSIGNED_LONG
boost/TAG: 86799
os.name: posix
sys.platform: linux2
sys.byteorder: little
platform.platform():
Linux-2.6.32-573.7.1.el6.x86_64-x86_64-with-redhat-6.7-Santiago
platform.architecture(): ('64bit', 'ELF')
floating_point_exceptions.division_by_zero_trapped: False
floating_point_exceptions.invalid_trapped: False
floating_point_exceptions.overflow_trapped: False
number of processors: 24
Memory total:  76,158,160,896
Memory free:   60,290,256,896
import thread: OK
"hello" = ['h', 'e', 'l', 'l', 'o']
u"hello" = ['h', '\x00', 'e', '\x00', 'l', '\x00', 'l', '\x00', 'o', '\x00']
u"\u00C5" = ['\xc5', '\x00'] as utf-8 = ['\xc3', '\x85']
LATIN CAPITAL LETTER A WITH RING ABOVE = Å


Many thanks in advance, Georg.


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