Dusan's "kick maps" idea has evolved into something better (we hope) that we call FEM (Feature Enhanced Maps)[*].
Reading is available here:
Let us know should you have any questions or problems!
Thanks a lot. I did use FEM and they look good. My real aim: In my structure there is a loop that looks complteley different to homologus published PDB structures. Can I use a FEM (2mFo -Fc) and show the density at 2Sigma to prove that my loop is distinct and real (away from model bias). I also made a AutoBuild-Iterative-Buiild-Composite-Omit-Map that produced a resolve-composite-map.mtz (shows same loop density). What sigma level should I display these maps in a paper? I did look at pavel_maps.PDF but confused as there are so many numbers. Thanks a lot. -V
Pavel
[*] This is still experimental and ongoing. Significant improvements to this tool are envisaged in future.
On 11/24/16 09:29, Veronica Fiorentino wrote:
Dear all, I am using the latest Phenix; Calculate Maps does not seem to have an option to for kickmaps as given in the https://www.phenix-online.org/documentation/reference/create_maps.html I have made a screenshot: http://imgur.com/a/upgqy
Am I missing something obvious? Alternately, If anyone can share a script I would prefer it!
many thanks Veronica _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]