Re: [phenixbb] strategy of refinement for a structure phased by bromide soaking

On Thu, 10 Jan 2008, Pascal EGEA wrote:

I would like to know why the best_solution after the automatic building run does not contain any of the Bromide ions. It has water molecules but no Bromide ions? What is the reason for that?

consider input_lig_file_list=my_heavy_atoms.pdb or something like that when running an autobuild. also, there's a couple emails back i asked about a related issue. frankly, i haven't sorted it out. -bryan p.s: always use the latest/greatest phenix.