Hi Charles,

I would use any scripting language you are familiar with - python, bash, csh. Here is a bash script adapted from

https://stackoverflow.com/questions/10523415/bash-script-to-execute-command-on-all-files-in-a-directory

for file in *.pdb

do

  echo $file

  phenix.molprobity "$file" > "$file"_results.txt

done

On mac - make a file mpscript put it in a directory with your .pdb, then run

chmod a+x mpscript

./mpscript

Hope it helps.

Best regards,

Oleg Sobolev.

On Mon, Jun 25, 2018 at 1:39 PM, CPMAS Chen <cpmasmit@gmail.com> wrote:

Hi, All,

I have about 100 structures needs be validated and optimized. what will be a fast way to do so? Can I somehow put phenix.molprobity in a circle?

Thanks!

--

***************************************************

Charles Chen

Research Instructor

University of Pittsburgh School of Medicine

Department of Anesthesiology

******************************************************

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