Hi Ben,

All you should need is the

    /programs/l/rosetta/3.2/rosetta_source/bin/mr_protocols.default

and the 

    /programs/l/rosetta/3.2/rosetta_database

If you set "align_with_sculptor=False" you would also need the (missing) files in pilot_script_dir. (I didn't realize these files are not in the rosetta distribution.)

Let me know of problems. 

Note: it may be helpful to run one or more of the regression tests on this to make sure you have everything set up correctly. You can do this for example with one of these:

phenix_regression.wizards.test_command_line_rosetta_quick_tests test_set_up # 10 sec, quick test for installation

phenix_regression.wizards.test_command_line_rosetta test_mr_rosetta # one full test, takes 15 minutes

phenix_regression.wizards.test_command_line_rosetta_quick_tests  # 34 tests, takes an hour

All the best,
Tom T

On Jan 31, 2011, at 1:15 PM, Ben Eisenbraun wrote:

Hi,

I'm testing Rosetta 3.2+PHENIX 1.7-650, and in the phenix.mr_rosetta
output, I see:

Checking rosetta paths:
 rosetta binary: /programs/l/rosetta/3.2/rosetta_source/bin/mr_protocols.default
 database_dir: /programs/l/rosetta/3.2/rosetta_database
 script_dir: /programs/l/rosetta/3.2/rosetta_source/src/apps/public/electron_density
pilot_script_dir: /programs/l/rosetta/3.2/rosetta_source/src/apps/pilot/frank/

In the script directory, the C++ files were not built along with the
regular Rosetta build.  Do those need to be compiled for the target
platform?

Also, the pilot_script_dir is empty.  Is there supposed to be something in
there?

Thanks.

-ben

--
| Ben Eisenbraun
| SBGrid Consortium                          | http://sbgrid.org       |
| Harvard Medical School                     | http://hms.harvard.edu  |
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Thomas C. Terwilliger
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Los Alamos National Laboratory
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