Hi, All
when I try to using map_to_model tool to optimize my model from
low-resolution map,
phenix.map_to_model refine_2.mtz seq_from_pdb.dat
I got the following error, even though I did not provide ncs file,
Space group symmetry written as NCS operators to ncs_from_symmetry.ncs_spec
Traceback (most recent call last):
File
"/usr/local/phenix-1.11-2567/build/../modules/phenix/phenix/command_line/map_to_model.py",
line 9, in <module>
run(sys.argv[1:],out=sys.stdout)
File
"/usr/local/phenix-1.11-2567/modules/phenix/phenix/autosol/map_to_model.py",
line 5729, in run
tracking_data=run_segment_and_split_map(params,out=out)
File
"/usr/local/phenix-1.11-2567/modules/phenix/phenix/autosol/map_to_model.py",
line 4931, in run_segment_and_split_map
ncs_group_obj,remainder_ncs_group_obj,tracking_data=segment_map(args)
File
"/usr/local/phenix-1.11-2567/modules/cctbx_project/cctbx/maptbx/segment_and_split_map.py",
line 5795, in run
params,map_data,pdb_hierarchy,tracking_data=get_params(args,out=out)
File
"/usr/local/phenix-1.11-2567/modules/cctbx_project/cctbx/maptbx/segment_and_split_map.py",
line 2055, in get_params
params=get_params_from_args(args)
File
"/usr/local/phenix-1.11-2567/modules/cctbx_project/cctbx/maptbx/segment_and_split_map.py",
line 2051, in get_params_from_args
return command_line.work.extract()
File
"/usr/local/phenix-1.11-2567/modules/cctbx_project/libtbx/phil/__init__.py",
line 1757, in extract
value = object.extract(parent=result)
File
"/usr/local/phenix-1.11-2567/modules/cctbx_project/libtbx/phil/__init__.py",
line 1757, in extract
value = object.extract(parent=result)
File
"/usr/local/phenix-1.11-2567/modules/cctbx_project/libtbx/phil/__init__.py",
line 1122, in extract
return self._type_from_words()(self.words, master=self)
File "/usr/local/phenix-1.11-2567/modules/cctbx_project/iotbx/phil.py",
line 40, in from_words
return sgtbx.space_group_info(symbol=str(symbol))
File
"/usr/local/phenix-1.11-2567/modules/cctbx_project/cctbx/sgtbx/__init__.py",
line 97, in __init__
symbols = space_group_symbols(symbol)
RuntimeError: cctbx Error: Space group symbol not recognized: