Re: [phenixbb] mrc to mtz conversion to open map in coot

Joshua, You can coerce Coot to auto-open your mtz if you add to your ~/.coot-preferences/phenix.py file: set_auto_read_column_labels("F", "PHIF") Paul. On 03/08/17 20:57, Pavel Afonine wrote:

Auto-open-MTZ is to load MTZ file assuming it contains Fourier map coefficients with labels that Coot recognizes automatically as appropriate map coefficients. In case of other labels (such as you get from phenix.map_to_structure_factors) you need to use "Open MTZ,.." and then specify what array you want to load.

Now it helps to understand that mrc file contains actual real-space map, not Fourier map coefficients. To load that map into Coot you need to use "Open map".

Pavel

On 8/3/17 08:34, Joshua Jude Lobo wrote:

...

Hi Paul

Thank you for your reply . I was using Auto-open-MTZ option in the drop-down for opening my map and it was failing to show up. However ,the Open MTZ option correctly read my MTZ file and displayed it.

Thank you for your help . The python function to generate the histogram was very helpful .

Sincerely Joshua Lobo

On Aug 2, 2017 13:59, "Paul Emsley" mailto:[email protected]> wrote:

On 02/08/17 19:57, Paul Emsley wrote:

Calculate -> Scripting ->

Calculate -> Scripting -> Python

:-/

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