Hi Danilo,
Another user on Debian 9 had a similar issue. What is the output to "locale
-a" and what is your LANG and LC_ALL environment variables set to? And in
the <phenix installation>/build/bin/phenix file, there is a place where
LC_ALL is set. What is LC_ALL set to in that file?
For unicode support, Phenix requires a language with UTF8 support (e.g.
en_GB.UTF-8). During the installation, Phenix tries to determine the locale
from the LC_ALL environment variable. By default, it gets set to
en_US.UTF-8 if nothing can be found. However, on Debian 9, I got an error
about en_GB even though en_US was available and set as the locale.
On my Debian 9.6 virtual machine, I have en_US.UTF-8 and en_GB.UTF-8
installed and my phenix installation is using en_US.UTF-8. If you want to
update the LC_ALL variable in the scripts in <phenix
installation>/build/bin,
1) Set LC_ALL to the language you want with UTF-8 support (e.g. "export
LC_ALL=en_US.UTF-8")
2) Run the "config_modules.sh" file in the <phenix installation>/build
directory to change all the scripts to use the new locale.
--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org
On Tue, Jan 8, 2019 at 7:47 AM Danilo Belviso
Dear Rob,
Thanks for your suggestions. I have just tried but it doesn't work, unfortunately.
Thanks again.
Regards,
Danilo
Il 2019-01-08 15:43 Robert Oeffner ha scritto:
Dear Danilo,
I encountered the same problem with the locale when installing Phenix on Ubuntu on Windows 10. The solution was to do from a bash shell:
*cd /usr/share/locale*
**
*sudo locale-gen "en_GB.UTF-8"*
**
*sudo dpkg-reconfigure locales*
I'm no linux expert so I wouldn't know if this procedure is general enough that it would work on your system or if it would also solve the other issues you mention before.
Regards,
Rob
On 08/01/2019 14:32, Danilo Belviso wrote:
Dear all,
I am intalling phenix on my Debian 9.6.
My arch is adm64 thus I downloaded the phenix version named Kernel 2.6 (64-bit; CentOS 6).
The installation procedure has been performed as suggested by the guide and no problems were obtained. However, by running phenix (after source phenix_env.sh) I get the follow output with several errors:
(main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_unref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_unref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_unref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GIO-CRITICAL **: g_loadable_icon_load: assertion 'G_IS_LOADABLE_ICON (icon)' failed (main.py:14196): Gtk-WARNING **: Error loading theme icon 'gtk-ok' for stock: Failed to load icon (main.py:14196): Gtk-CRITICAL **: render_fallback_image: assertion 'pixbuf != NULL' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_ref: assertion 'G_IS_OBJECT (object)' failed (main.py:14196): GLib-GObject-CRITICAL **: g_object_unref: assertion 'G_IS_OBJECT (object)' failed
Error in sys.excepthook: Traceback (most recent call last): File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/App.py",
line 886, in _excepthook Error.show_exception_dialog(type, value, traceback) File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/Error.py",
line 75, in show_exception_dialog if (app.bug_timer.IsRunning() is False): AttributeError: 'PhenixApp' object has no attribute 'bug_timer'
Original exception was: Traceback (most recent call last): File
"/home/bbdanilo/Programmi/phenix-1.14-3260/build/../modules/phenix/wxGUI2/command_line/main.py",
line 23, in <module> run(sys.argv[1:]) File
"/home/bbdanilo/Programmi/phenix-1.14-3260/build/../modules/phenix/wxGUI2/command_line/main.py",
line 17, in run wxapp = App.PhenixApp(args) File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/App.py",
line 70, in __init__ wx.App.__init__(self, 0) File
"/home/bbdanilo/Programmi/phenix-1.14-3260/base/lib/python2.7/site-packages/wx-3.0-gtk2/wx/_core.py",
line 8628, in __init__ self._BootstrapApp() File
"/home/bbdanilo/Programmi/phenix-1.14-3260/base/lib/python2.7/site-packages/wx-3.0-gtk2/wx/_core.py",
line 8196, in _BootstrapApp return _core_.PyApp__BootstrapApp(*args, **kwargs) File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/App.py",
line 116, in OnInit self.start_gui() File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/App.py",
line 144, in start_gui callback_on_import=self.show_message) File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/Tracking.py",
line 280, in start_tracking project_class="wxGUI2.Tracking.phenix_project_database", **kwds) File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/phenix/tracking/__init__.py",
line 19, in start_tracking callback_on_import=callback_on_import) File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/Tracking.py",
line 117, in __init__ super(phenix_project_database, self).__init__(*args, **kwds) File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/phenix/tracking/project_db.py",
line 39, in __init__ self.choose_project(try_current_dir=True) File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/phenix/tracking/project_db.py",
line 339, in choose_project project_info = self.create_first_project() File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/Tracking.py",
line 124, in create_first_project from wxGUI2.Home import Projects File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/Home/Projects.py",
line 3, in <module> from wxGUI2 import Base, Controls, PhilLayout, Windows, utils, Buttons File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/PhilLayout.py",
line 5, in <module> from wxGUI2 import Base, Controls, Windows, utils, PhilInterface, FileDisplay File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/phenix/wxGUI2/FileDisplay.py",
line 5, in <module> import wxtbx.info_panels File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/cctbx_project/wxtbx/info_panels.py",
line 5, in <module> import wxtbx.plots File
"/home/bbdanilo/Programmi/phenix-1.14-3260/modules/cctbx_project/wxtbx/plots/__init__.py",
line 21, in <module> locale.setlocale(locale.LC_ALL, '') File
"/home/bbdanilo/Programmi/phenix-1.14-3260/base/lib/python2.7/locale.py",
line 581, in setlocale return _setlocale(category, locale) locale.Error: unsupported locale setting
Phenix starts by opening a window that states "locale 'en_GB' cannot be set" and abruptly closes so that I cannot use it.
Do you have any suggestions to overcome such problems?
I tried with Kernel 2.6 (64-bit; CentOS 5) and the 32-bit version too and the result is the same.
Thanks in advance for your suggestions.
Danilo _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]
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