Hello Ivan,
I am facing a problem. I have a protein-RNA complex at 2A resolution I refined using TLS in Phenix. Now in the pdb file I have ANISOU line for every atom
these ANISOU records are the result of TLS refinement and not an error. For example, see http://phenix-online.org/presentations/latest/pavel_refinement_general.pdf from page 23, if you wish to learn about TLS.
and probably many other errors.
Specifically, what are these errors?
This is the reason I am not able to run Delphi or PDB2PQR to create potential electrostatic map. I removed already all water molecules and all heteratoms and ANISOU lines and RNA molecule. The program creating the phi file for the potentials does not work at all. Do you know any server which can correct any errors in the pdb file in order to run properly the program to create electrostatic map ??
I would talk to developers of respective programs. To me it sounds very odd that you need to do all these weird error-prone manipulations to your PDB file in order to run these programs. Pavel