Mark

You can use edits (for a one of) or cif_links.

Coot can not display all links that Phenix uses. We are working on a display for this.

Cheers

Nigel

---
Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Email : NWMoriarty@LBL.gov
Web  : CCI.LBL.gov


On Fri, Feb 23, 2024 at 5:29 AM Mark Saper <saper@umich.edu> wrote:
I need to create a phosphodiester bond between O3’ of a DNA nucleotide and P of a 3DR HETATM ligand (a modified nucleotide).  I also need to delete O3P of the 3DR nucleotide.  How can I create this restraint? 

Also, how can I get COOT to display this bond?

Thanks,
Mark
_____________________
Mark A. Saper, Ph.D.
Dept of Microbiology and Molecular Genetics
Hebrew University Faculty of Medicine
saper@umich.edu  |  +972 52 815-0480

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