Re: [phenixbb] nucleic acid secondary restraints breaking in 1.7.1-743

Thanks Nat Got past that part but now a new error Traceback (most recent call last): File "/usr/local/phenix-dev-842/phenix/phenix/command_line/refine.py", line 11, in <module> command_line.run(command_name="phenix.refine", args=sys.argv[1:]) File "/usr/local/phenix-dev-842/phenix/phenix/refinement/command_line.py", line 96, in run call_back_handler=call_back_handler) File "/usr/local/phenix-dev-842/phenix/phenix/refinement/driver.py", line 1376, in run ncs_manager = self.ncs_manager) File "/usr/local/phenix-dev-842/phenix/phenix/refinement/strategies.py", line 489, in refinement_machine fmodels.fmodel_xray().update_f_part( AttributeError: 'manager' object has no attribute 'update_f_part' Immediately after bulk solvent modeling and scaling. F On Aug 14, 2011, at 5:29 PM, Nathaniel Echols wrote:

On Sun, Aug 14, 2011 at 4:26 PM, Francis E Reyes wrote:

...

Traceback (most recent call last): File "/usr/local/phenix-1.7.1-743/phenix/phenix/command_line/refine.py", line 11, in <module> command_line.run(command_name="phenix.refine", args=sys.argv[1:]) File "/usr/local/phenix-1.7.1-743/phenix/phenix/refinement/command_line.py", line 67, in run overwrite = command_line_interpreter.command_line.options.overwrite) File "/usr/local/phenix-1.7.1-743/phenix/phenix/refinement/driver.py", line 112, in __init__ hbond_params=self.params.hydrogen_bonding) File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/secondary_structure/__init__.py", line 494, in create_hbond_proxies log=log) File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/secondary_structure/__init__.py", line 286, in hydrogen_bond_proxies_from_selections log=log) File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/secondary_structure/base_pairing.py", line 415, in create_hbond_proxies if distance_values[i][2] != '_': IndexError: tuple index out of range

When specifying a single base pair when using secondary_structure nucleic acids restraints

Could you please try the latest nightly build? This may have been fixed already.

-Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb