On Tue, 2011-03-15 at 11:45 -0400, Zhang yu wrote:
> Fast Rotation Function Table: 1
> -------------------------------
> #SET Top (Z) Second (Z) Third (Z)
> 1 -1129.09 32.53 --- --- --- ---
> ---- ---------- ----- ---------- ----- ---------- -----
>
Well, your Z-score is very promising. What size protein/DNA you have?
The likely asu content is over a megadalton, so unless the protein is
huge, you probably have more than one copy - this would explain bad
initial R-values. Patterson suggests that too. You probably need to
play with the estimate of asu content a bit to get rid of negative LLG.
What happens if you run a search looking for the second copy with the
first one in place?
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