Hi Yonglin, Normally you don't need to specify any queueing system commands, so you should be good to go. Let me know of any problems! All the best, Tom T ________________________________ From: [email protected] [[email protected]] on behalf of Yonglin Hu [[email protected]] Sent: Tuesday, October 20, 2015 8:46 PM To: [email protected] Subject: [phenixbb] Queueing system commands for parallel Phenix/Rosetta jobs Hello All, We have setup a cluster with several executing nodes and we would like to run our Phenix/Rosetta molecular replacement jobs on the cluster. In the Job Control screen, I put "qsub -q all.q -o $HOME/log1 -e $HOME/log1" as command to use to run multiple jobs. But I am not sure what I should use for "queueing system commands". We are using SGE as the queueing system on our cluster. Any help would be greatly appreciated! Yonglin Hu