Hi Abhisek,

Can you provide the output to

/usr/local/phenix-1.11.1-2575/base/bin/python /usr/local/phenix-1.11.1-2575/modules/cctbx_project/libtbx/configure.py --current_working_directory /usr/local/phenix-1.11.1-2575/build --command_version_suffix 1.11.1-2575 phenix phaser solve_resolve labelit

That's the command that is failing, and I'm assuming you did not delete the installation directory that was created from running the install command.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909

On Thu, Nov 3, 2016 at 11:31 PM, abhisek Mondal <abhisek.mndl@gmail.com> wrote:
Hi,

The nightly build version is giving me the same error. I think something is going wrong during configuring the built.

Please have a look.
Thank you.

On Tue, Nov 1, 2016 at 11:02 PM, Dr. Robert Oeffner <rdo20@cam.ac.uk> wrote:
Dear Abhisek,
 
Version 1.10 is quite old and there have been several bug fixes and new features since then. We’re just about to release version 1.11 so the current nightly builds on the website should be quite stable. If you detect otherwise we would be interested to hear back.
 
Regards,
 
Robert
 
Sent: Tuesday, November 1, 2016 5:07 PM
Subject: RE: [phenixbb] phenix fails to configure on fedora 20
 

I'll try...
But, my concern is, when I tried to install the same version in my workstation it worked cool.
Is this some sort of issue with my laptop ?
Nightly builds are beta right ? Won't it cause any stability issue ?

 
On Nov 1, 2016 3:07 PM, <rdo20@cam.ac.uk> wrote:

Have you tried one of the recent nightly builds or the centos5 version?

 

Rob

 

Sent from my Windows 10 phone
--
Robert Oeffner, Ph.D.
Research Associate, The Read Group
Department of Haematology,
Cambridge Institute for Medical Research
University of Cambridge
Cambridge Biomedical Campus
Wellcome Trust/MRC Building
Hills Road
Cambridge CB2 0XY

www.cimr.cam.ac.uk/investigators/read/index.html
tel: +44(0)1223 763234
mobile: +44(0)7712 887162

 

From: abhisek Mondal
Sent: 01 November 2016 07:39
To: phenixbb@phenix-online.org
Subject: [phenixbb] phenix fails to configure on fedora 20

 

Hi,

I'm using Fedora 20 on a 4 core laptop. When I tried to install phenix it gave following error.

 

Same version installed fine in my workstation but keep failing here.

 

Please help me out here.

Thanks.

 

 

[root@viralhost phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6]# ./install

 

    ==========================================================================

                          Phenix Installation

 

                          version: 1.10.1-2155

                     machine type: intel-linux-2.6

                       OS version: 3.19.8-100.fc20.i686

                      destination: /usr/local/phenix-1.10.1-2155

                  # of processors: 4

    =========================================================================

   

Configuring Phenix components...

Traceback (most recent call last):

  File "./bin/install.py", line 262, in <module>

    installer(sys.argv[1:]).install()

  File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 185, in install

    self.install_from_binary()

  File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 295, in install_from_binary

    self.reconfigure(log=log)

  File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 460, in reconfigure

    call(args=args, log=log, verbose=self.options.verbose)

  File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/installer_utils.py", line 81, in call

    raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc))

RuntimeError: Call to '/usr/local/phenix-1.10.1-2155/base/bin/python /usr/local/phenix-1.10.1-2155/modules/cctbx_project/libtbx/configure.py --current_working_directory /usr/local/phenix-1.10.1-2155/build --command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit' failed with exit code 126

 

--

Abhisek Mondal

Research Fellow

Structural Biology and Bioinformatics Division

CSIR-Indian Institute of Chemical Biology

Kolkata 700032

INDIA

 




--
Abhisek Mondal
Research Fellow
Structural Biology and Bioinformatics Division
CSIR-Indian Institute of Chemical Biology
Kolkata 700032
INDIA

_______________________________________________
phenixbb mailing list
phenixbb@phenix-online.org
http://phenix-online.org/mailman/listinfo/phenixbb
Unsubscribe: phenixbb-leave@phenix-online.org