Re: [phenixbb] phenix.phaser params.eff labin problem

Hi Nat, Thanks for you help. I solved that problem with Ralf's help now. Just reset the $PATH make phenix.phaser appearing before CCP4's. GP On Wed, Jul 20, 2011 at 8:39 PM, Nathaniel Echols wrote:

I think this is a known problem, but I'm not sure how to fix it - I am downloading the latest CCP4 now to try for myself. Ralf probably knows more. Did you source the setup file in the CCP4 installation?

-Nat

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Hi Nat, Thank you so much! That's cool. I just wrote a None to that solution and it works!! Now I have some new problems: At beginning, I only have phenix installed. I do not have CCP4 installed. Then I run "phenix.phaser params.eff" to call phenix run phaser from

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params.eff. It works well. Then, I installed CCP4 with its own phaser inside. Then I run again "phenix.phaser params.eff". The computer start to import files (should be some libraries and supporting files, not input data) from CCP4 installation directory. It seems so strange for me. And because some of the .so files in CCP4 directory are for 32bit, phenix.phaser gave me error message: wrong ELF class: ELFCLASS32 and refused to keep running. Is there anyway to set some kind of PATH variables to let phenix.phaser params.eff run like without CCP4 installed. (which I did at beginning). Sorry for so many questions. Don't worry to reply if you do not have time. I fully understand and thanks a lot for your reply. regards, GP

On Wed, Jul 20, 2011 at 8:27 PM, Nathaniel Echols wrote:

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On Wed, Jul 20, 2011 at 3:46 AM, G P wrote:

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Now I can make it. I just type labin="FP,SIGFP,DANO,SIGDANO". Then

On Wed, Jul 20, 2011 at 11:35 AM, G P wrote: script there

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is no error to find the labels. I think because I should give all columns together.

Right, sorry, that's another thing that CCTBX does automatically. This command will show you what array labels Phenix recognizes:

iotbx.reflection_file_reader data.mtz

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But there is another problem. When I run the script, it shows me: ... File

"/usr/local/phenix-1.7.1-743/phaser/phaser/phenix_interface/driver.py",

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line 694, in __init__ assert os.path.isfile(params.phaser.solution) AssertionError File

"/usr/local/phenix-1.7.1-743/phaser/phaser/phenix_interface/driver.py",

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line 694, in __init__ assert os.path.isfile(params.phaser.solution) AssertionError

Look for a parameter called "solution" - this needs to be left as None. (I don't think there's any way to use this from the command line right now - it's very specific to the GUI.)

-Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

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