So I was running autobuild on the command line with:

phenix.autobuild data=data.mtz model=model.pdb rebuild_in_place=False acceptable_r=0.2

I have a model from another data set that is missing some loops and new data sets which I would like to use autobuild to see if the model can be extended.

I am using 1.8.4-1496 on a mac with osx 10.6.8. I was an idiot and when looking in the directory to check out one of the RUN_FILE_#.log files, I accidentally clicked on the RUN_FILE executable which started another AutoBuild subprocess. Since then all the other subprocesses had finished, but overall run stalled at:

Splitting work into 4 jobs and running with 1 processors using sh
background=False in ./AutoBuild_run_6_/TEMP0
Final job will be run with sh with background=True
Starting job 1...Log will be: ./AutoBuild_run_6_/TEMP0/RUN_FILE_8.log
Starting job 2...Log will be: ./AutoBuild_run_6_/TEMP0/RUN_FILE_9.log
Starting job 3...Log will be: ./AutoBuild_run_6_/TEMP0/RUN_FILE_10.log
Starting job 4...Log will be: ./AutoBuild_run_6_/TEMP0/RUN_FILE_11.log

And the combine and extend didn't happen. I saw a post about combining models from autobuild but it was for rebuild_in_place=True and the post mentioned that the models needed to have identical sequences for it to work. Is there a way to save my mistake without starting over?

The run I had restarted had yielded Rs=999.9 so If there is a way to maybe combine just 3 of the 4 that may be helpful as well.

Thanks,

Heather Condurso

condurso@bc.edu