On Fri, Sep 26, 2014 at 8:42 AM, Phan, Jason <jason.phan@vanderbilt.edu> wrote:

That made me think that Phenix does model hydrogen bonding interactions, just maybe not as consistently.

If this is happening it's entirely due to the way Reduce adds hydrogens - the actual minimization in phenix.refine won't do anything special.

-Nat